PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g044290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 26846.2 Da    PI: 5.2749
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g044290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+e+++
  Csa16g044290.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCN 59
                    69**********************************************85 PP

2K-box52.22.7e-18921701997
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++a++ kei    + +R++ Ge+L+ L+++eLqqLe++Le +l+++ ++K++ ++++i+elq+k  +l +enk+Lr++
  Csa16g044290.1  92 SDHARMSKEIADKSHRLRQMRGEELQGLNIEELQQLEKALEAGLTRVIETKSDKIMNEISELQRKGVQLMDENKRLRQQ 170
                     5788999999999999*************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
CDDcd002654.30E-40277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-31375IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.73987180IPR002487Transcription factor, K-box
PfamPF014861.6E-1692170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCNS  60
SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE IADKSHRLRQ MRGEELQGLN  120
IEELQQLEKA LEAGLTRVIE TKSDKIMNEI SELQRKGVQL MDENKRLRQQ GTQLTEVNER  180
LGMQIYNNVH ESGVDEVENA AVYEEGHSSE SITNAGNGAP VDSESSDTSL RLGLAYGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D1e-18370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C1e-18370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B1e-18370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A1e-18370269MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J2e-18369268Myocyte-specific enhancer factor 2A
3p57_I2e-18369268Myocyte-specific enhancer factor 2A
3p57_D2e-18369268Myocyte-specific enhancer factor 2A
3p57_C2e-18369268Myocyte-specific enhancer factor 2A
3p57_B2e-18369268Myocyte-specific enhancer factor 2A
3p57_A2e-18369268Myocyte-specific enhancer factor 2A
3kov_J2e-18369268Myocyte-specific enhancer factor 2A
3kov_I2e-18369268Myocyte-specific enhancer factor 2A
3kov_B2e-18369268Myocyte-specific enhancer factor 2A
3kov_A2e-18369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2111710.0AF211171.1 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA, complete cds.
GenBankAK2265370.0AK226537.1 Arabidopsis thaliana mRNA for short vegegative phase protein, complete cds, clone: RAFL07-09-C20.
GenBankBT0330980.0BT033098.1 Arabidopsis thaliana unknown protein (At2g22540) mRNA, complete cds.
GenBankEU0786870.0EU078687.1 Arabidopsis thaliana short vegetative phase (SVP) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472243.11e-174PREDICTED: MADS-box protein SVP-like
SwissprotQ9FVC11e-160SVP_ARATH; MADS-box protein SVP
TrEMBLR0HR571e-166R0HR57_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__174__AT2G22540.11e-157(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-150MIKC_MADS family protein